Unilateral polycystic kidney with PKHD1 gene mutation

Article information

Kidney Res Clin Pract. 2024;43(6):829-831
Publication date (electronic) : 2024 November 18
doi : https://doi.org/10.23876/j.krcp.24.157
1Department of Internal Medicine, Chungbuk National University Hospital, Cheongju, Republic of Korea
2Department of Pediatrics and Rare Genetic Disease Center, Chungbuk National University Hospital, Cheongju, Republic of Korea
3Department of Radiology, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Republic of Korea
4Department of Internal Medicine, Chungbuk National University Hospital, Chungbuk National University College of Medicine, Cheongju, Republic of Korea
Correspondence: Hye-Young Kim Department of Internal Medicine, Chungbuk National University Hospital, Chungbuk National University College of Medicine, 1 Chungdae-ro, Seowon-gu, Cheongju 28644, Republic of Korea. E-Mail: hyekim@chungbuk.ac.kr
Received 2024 June 21; Revised 2024 July 5; Accepted 2024 July 8.

A 19-year-old female visited the outpatient clinic to follow up on kidney imaging. She had been diagnosed with incidental left hydronephrosis which was found at fetal ultrasonography and followed yearly until 6 years old, and she had no medical problems including urinary tract infections. There was no family history of kidney disease including cystic disease and her parents’ kidney sonographic findings were normal. Her physical examination findings, blood and urine tests were all normal.

The sonographic finding when she was 2 years old showed only a 0.6 cm-sized simple cyst in the right kidney and severe hydronephrosis of the left kidney, however, dynamic abdominal and pelvic computed tomography (CT) performed at 19-year-old showed innumerable cysts of the right kidney, and residual mild dilatation of left renal pelvocalyx which was thought the sequelae of previous severe hydronephrosis.

CT showed that the left kidney morphology was normal except for the previously diagnosed mild calyceal dilatation, but a polycystic change was found throughout the total right kidney (Fig. 1). A next-generation sequencing (NGS) for polycystic kidney disease confirmed a heterozygous mutation of c.7769T>G, p.(Met2590Arg) in the PKHD1 gene which was a variant of unknown clinical significance (VUS). PKD1, PKD2, and other PCKD-related gene tests were negative (Table 1).

Figure 1.

Abdominopelvic computed tomography image.

It showed that the left kidney morphology was normal except for the previously diagnosed mild calyceal dilatation, but a polycystic change was found throughout the total right kidney.

Result of next-generation sequencing polycystic kidney disease panela and variant interpretation

Mutations in PKHD1 are an important cause of autosomal recessive polycystic kidney disease (ARPKD), but the clinical manifestations are diverse. This case has a heterozygote mutation in PKHD1, but as it is a VUS state, there is no clinical problem and it is expected that there will be no genetic abnormality. It is not sure that the left hydronephrosis found in this case can be assumed as occurring due to the influence of this mutation. However, mutations in PKHD1 were also identified in studies analyzing families of ARPKD patients, and it can be explained that previously reported cases of asymptomatic unilateral polycystic kidney disease in adults are also might be partially associated with PKHD1 [1,2]. However, it is still difficult to explain why polycystic nephropathy occurs in only one kidney, and it is believed that the mechanism can be revealed through additional clinical and genetic experiences.

In this case, the PKHD1 gene mutation was confirmed through NGS analysis in an incidentally found unilateral polycystic kidney. Although the unilateral polycystic kidney is not clinically significant, it is necessary to confirm that it is one of the various heterozygotes of the PKHD1 gene.

This report was approved by the Institutional Review Board of Chungbuk National University Hospital (No. 2023-10-014).

Notes

Conflicts of interest

All authors have no conflicts of interest to declare.

Data sharing statement

The data presented in this study are available from the corresponding author upon reasonable request.

Authors’ contributions

Conceptualization, Investigation: JHP, HYK

Data curation: All authors

Formal analysis: JHP

Methodology: HW, BSC

Supervision: HW, HYK

Writing–original draft: JHP, HW

Writing–review & editing: All authors

All authors read and approved the final manuscript.

References

1. Gunay-Aygun M, Turkbey BI, Bryant J, et al. Hepatorenal findings in obligate heterozygotes for autosomal recessive polycystic kidney disease. Mol Genet Metab 2011;104:677–681.
2. Cho JM, Park HC, Lee JW, et al. Baseline characteristics of the Korean genetic cohort of inherited cystic kidney disease. Kidney Res Clin Pract 2023;42:617–627.

Article information Continued

Figure 1.

Abdominopelvic computed tomography image.

It showed that the left kidney morphology was normal except for the previously diagnosed mild calyceal dilatation, but a polycystic change was found throughout the total right kidney.

Table 1.

Result of next-generation sequencing polycystic kidney disease panela and variant interpretation

Gene Zygosity Variant Classification CADD (hg38 v1.7) Phenotype Phenotype MIM No. Inheritance
PKHD1 Heterozygous c.7769T>G, p.(Met2590Arg) VUS 0.912 Polycystic kidney disease 4, with or without hepatic disease 263200 AR
PKD1 Not detected Polycystic kidney disease 1 173900 AD
PKD2 Not detected Polycystic kidney disease 2 613095 AD
GANAB Not detected Polycystic kidney disease 3 600666 AD
DZIP1L Not detected Polycystic kidney disease 5 617610 AR
DNAJB11 Not detected Polycystic kidney disease 6 with or without polycystic liver disease 618061 AD
HNF1B Not detected Renal cysts and diabetes syndrome 137920 AD
ALG8 Not detected Polycystic liver disease 3 with or without kidney cysts 617874 AD
LRP5 Not detected Polycystic liver disease 4 with or without kidney cysts 617875 AD

AD, autosomal dominant; AR, autosomal recessive; CADD, combined annotation dependent deletion; MIM, Mendelian inheritance in man; VUS, variant of uncertain significance.

a

Gene list included in NGS panel is ANKS6, CEP164, CEP83, COL4A1, DNAJB11, DZIP1L, GANAB, HNF1B, INVS, MAPKBP1, NPHP1, NPHP3, NPHP4, PKD1, PKD2, PKHD1, TMEM67, TSC1, TSC2, TTC21B, UMOD, VHL, WDR19, ALG8, ALG9, CEP290, COL4A4, ETFA, FLCN, LRP5, NOTCH2, PAX2, PMM2, and SEC61A1.