Prognostic stratification in a diabetic kidney disease trial using plasma concentrations of soluble tumor necrosis factor receptor 1
Article information
Abstract
Background
Concentration of circulating soluble tumor necrosis factor receptor 1 is associated with faster progression in patients with diabetic kidney disease based on data obtained from large longitudinal cohort studies. A cutpoint of 4.3 ng/mL baseline plasma concentration was identified to stratify patients and predict clinical outcome. We set out to test the prognostic utility of this cutpoint in a randomized clinical trial.
Methods
Soluble tumor necrosis factor receptor 1 concentration was measured across plasma samples from Joslin cohort and selonsertib trial cohort. Estimated glomerular filtration rate slope was calculated using a patient-specific linear regression model based on serum creatinine concentration and compared between the cohorts. Kidney-related events were plotted using Kaplan–Meier estimates for both cohorts.
Results
Participants from both the clinical study cohort and the observational cohort showed an inverse relationship between baseline plasma concentrations of tumor necrosis factor receptor 1 and estimated glomerular filtration rate. When stratified based on baseline soluble tumor necrosis factor receptor 1 cutpoint, higher probability of experiencing a clinical event was found in patients with levels of soluble tumor necrosis factor receptor 1 exceeding 4.3 ng/mL in either of the cohorts.
Conclusion
We demonstrated the prognostic utility of plasma concentrations of circulating soluble tumor necrosis factor receptor 1 in identifying individuals with diabetic kidney disease at an elevated risk of progressive kidney function decline in a randomized clinical study setting. This data supports previous findings from large observational cohorts and supports the use of this marker as a reliable predictor of disease outcome.
Introduction
Diabetic kidney disease (DKD) is among the most common chronic disorders globally, affecting up to 40% of patients with type 2 diabetes mellitus (T2DM) [1]. It is characterized by a progressive and highly variable decline of kidney function, with about 20% of patients exhibiting a rapid decline in estimated glomerular filtration rate (eGFR) of at least 3 mL/min/1.73 m2 per year [2]. Many phase 3 clinical trials in patients with DKD rely on traditional event-driven endpoints, including a sizeable relative decline in kidney function (e.g., ≥40% or 50% decline in eGFR) or progression to end-stage kidney disease (ESKD), and often require large cohorts with extended follow-up to demonstrate efficacy. The ability to enrich clinical trials with participants more likely to experience a rapid decline in kidney function has the potential to accelerate the development of novel therapeutics.
Elevated concentration of circulating soluble tumor necrosis factor receptor 1 (sTNFR1) in patients with T2DM has been associated with progression to ESKD in cohort studies [3]. sTNFR1 is a soluble form of the pro-inflammatory cytokine tumor necrosis factor alpha (TNF-α) receptor, readily detectable in blood samples from healthy persons and elevated in patients with inflammatory diseases, including DKD. However, the prognostic utility of sTNFR1 plasma concentrations in clinical trials has not been demonstrated.
The Joslin cohort investigated the natural history of the DKD progression in patients with T2DM and impaired kidney function (chronic kidney disease [CKD] stages 3 or 4) followed for a period of 4 to 15 years. Data from this cohort were used to derive a prognostic criterion for patient stratification based on sTNFR1 plasma concentrations and to define the corresponding cutpoint of 4.3 ng/mL [4]. GS-US-223-1015 was a double-blind, placebo-controlled, dose-finding, 48-week phase 2 trial that enrolled 334 patients with T2DM and DKD, selected for high rates of progression based on eGFR and urine albumin-to-creatinine ratio [5]. The trial evaluated the safety and efficacy of three doses of selonsertib, a small molecule that selectively inhibits apoptosis signal-regulating kinase 1 (ASK1), a ubiquitously expressed serine/threonine kinase activated by oxidative stress that promotes inflammation, apoptosis, and fibrosis. In preclinical models of DKD/CKD, ASK1 inhibition reduced kidney injury, inflammation, and fibrosis, prevented podocyte loss, improved overall kidney function, and attenuated GFR decline [6]. A nominally significant reduction in the decline of chronic eGFR slope (rate of decline from week 4 to 48 that followed an acute decrease in eGFR during the first 4 weeks) was observed with 18-mg once daily selonsertib relative to placebo [5]. The previously proposed sTNFR1 cutpoint of 4.3 ng/mL was based on large longitudinal cohorts of DKD patients. We evaluated the prognostic utility of sTNFR1 in a highly selected clinical trial population in direct comparison to a cohort study used to derive the cutpoint to determine if it is useful in a setting of clinical trial setting. Additionally, a hypothesis that baseline sTNFR1 concentrations could have predictive utility for clinical benefit in patients treated with selonsertib was generated based on numerical trends observed.
Short methods
Seventy-six sites across the United States and four sites across Canada—representing hospitals, outpatient clinics, academic centers, and private research sites—conducted the double-blind, placebo-controlled, dose-finding phase 2 trial (ClinicalTrials.gov identifier NCT02177786) between 06/01/2014 and 07/01/2016 in accordance with the International Conference on Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use guidelines for Good Clinical Practice (GCP).
Joslin cohort
Selection of the Joslin cohort and study protocols were described previously by Yamanouchi et al. [4].
Selonsertib trial cohort
Eligible participants were adults with T2DM and treatment-refractory moderate to advanced DKD (eGFR of ≥15 to <60 mL/min per 1.73 m2 at screening) and albuminuria (≥150 mg/g), receiving standard-of-care therapies (including angiotensin converting enzyme inhibitors or angiotensin receptor blockers at an appropriate and stable dose). After screening, patients were randomized in a 1:1:1:1 allocation to receive one of three doses of selonsertib (2, 6, or 18 mg) or a matching placebo once daily for 48 weeks [5] (GS-US-223-105, NCT02177786).
Estimated glomerular filtration rate calculation
We calculated eGFR using the abbreviated (four-variable) MDRD (Modification of Diet in Renal Disease) Study formula. In a post hoc analysis, we used a piecewise linear regression to model the rate of chronic eGFR decline between week 4 and week 48.
Soluble tumor necrosis factor receptor 1 measurement
We originally measured sTNFR1 concentration in plasma with the R-PLEX Human TNF-RI Antibody Set (Meso Scale Discovery, Rockville, MD, USA) at BioAgilytix (Durham, NC, USA) and converted to equivalent concentrations to the R&D Systems sTNFR1 ELISA (Minneapolis, MN, USA), with the results of a method comparison study using GS-US-223-1015 samples (goodness of fit R2 = 0.83 [7]). The derived cut point at a population level was the same as reported by others when using the R&D assay [4], supporting the idea that the correlation between the two assay formats is sufficient to avoid introducing significant bias for the purposes of this exploratory analysis.
Clinical events
We defined a clinical event as either death, ESKD, or ≥40% loss of eGFR within the time from baseline to 48 weeks (GS-US-223-1015) or during a 3-year follow-up (Joslin cohort).
Estimated glomerular filtration rate slope and hazard ratios
We calculated eGFR slope [8] using a patient-specific linear regression model from time series of eGFR based on serum creatinine concentration and expressed in mL/min/1.73 m2 per year [4]. We used R version 3.5.2 (R Foundation for Statistical Computing) for all analyses.
Ethics statements
The trial was conducted in accordance with the Declaration of Helsinki and the International Council on Harmonisation tripartite guideline on the ethical principles of GCP. The protocol was approved by Institutional Review Boards or Ethics Committees at all participating sites, and all patients signed informed consent.
RESULTS
Most baseline demographic characteristics were similar for the Joslin T2DM and selonsertib trial populations (Table 1); however, the trial population had a higher mean baseline sTNFR1 than the Joslin cohort (Table 1).
We correlated the sTNFR1 plasma concentration and eGFR in the selonsertib trial and Joslin cohort for each individual subject (Fig. 1). We used data generated from the Joslin cohort and compared it to the selonsertib trial cohort at baseline or 48-week time point. We observed high inverse correlation at baseline in both datasets (r = –0.68 [95% confidence interval (CI), –0.75 to –0.60], p < 0.001; r = –0.74 [95% CI, –0.79 to –0.68], p < 0.001).
Inverse correlation between plasma sTNFR1 and eGFR at baseline.
Relationship between plasma sTNFR1 concentration and eGFR in the Joslin cohort (A) and in the clinical trial cohort (B). Each data point represents an individual participant. The dashed vertical line indicates the prespecified cutpoint of 4.3 ng/mL used to stratify low and high sTNFR1 groups. Spearman rank correlation coefficients were calculated.
sTNFR1, soluble tumor necrosis factor receptor 1; eGFR, estimated glomerular filtration rate.
Participants in the two study cohorts were then stratified by baseline sTNFR1 plasma concentrations into two groups, high and low, with plasma sTNFR1 >4.3 ng/mL and ≤4.3 ng/mL, respectively, based on previously published data [4]. Clinical events, consisting of death, progression to ESKD, or ≥40% reduction in eGFR were counted during the follow-up, and a Cox proportional hazards model was utilized to determine the risk of experiencing such an event. Results were represented as a probability of event-free survival over time (Fig. 2). Even though a relatively small number of clinical events was detected in the clinical study cohort due to a modest cohort size and a relatively short follow-up time, we found a significantly higher probability of experiencing an event in high sTNFR1 subgroups in each of the cohorts, with comparable hazard ratios of 2.58 and 2.22 for Joslin and trial cohorts respectively.
Kaplan–Meier estimates of kidney-related events (end-stage renal disease, >40% loss of eGFR from baseline, or death).
(A) GS-US-223-1015 trial cohort. Patients with sTNFR1 >4.3 ng/mL (yellow) had a significantly higher risk of end-stage renal disease, >40% loss of estimated glomerular filtration rate from baseline, or death compared with those with sTNFR1 ≤4.3 ng/mL (blue) (Cox proportional hazard ratio [HR], 2.22; 95% confidence interval [CI], 1.13–4.36; p = 0.02). (B) Joslin type 2 diabetes mellitus cohort. Patients with sTNFR1 >4.3 ng/mL (yellow) had a significantly higher risk of kidney events compared with those with sTNFR1 ≤4.3 ng/mL (blue) (Cox proportional HR, 2.58; 95% CI, 1.71–3.89; p = 6.06e–06).
sTNFR1, soluble tumor necrosis factor receptor 1; eGFR, estimated glomerular filtration rate.
We utilized eGFR slope as a proxy for the rate of kidney functional decline [8]. When placebo and the 18 mg selonsertib GS-US-223-1015 study arms were compared, we found a significant reduction in eGFR slope decline in both high- and low-sTNFR1 groups but with a numerically greater reduction in the high sTNFR1 subgroup (Fig. 3). This indicates a potential utility for baseline sTNFR1 as a predictive marker of selonsertib treatment benefit in DKD patients, a hypothesis that we plan to address prospectively in an ongoing clinical study.
eGFR slope in different subject subgroups.
(A) Placebo- or selonsertib (SEL) 18 mg-treated trial patients stratified into two groups based on plasma soluble tumor necrosis factor receptor 1 (sTNFR1) levels (≤4.3 ng/mL and >4.3 ng/mL), as described previously. The estimated eGFR slope between week 4 and week 48 is shown, and the Wilcoxon test was applied to determine the statistical significance of the difference between the placebo and SEL 18 mg-treated groups. (B) Joslin cohort subjects stratified by plasma sTNFR1 levels (≤4.3 ng/mL and >4.3 ng/mL). The annual eGFR slope is shown, and the Wilcoxon test was applied to assess the difference between the high and low sTNFR1 groups.
eGFR, estimated glomerular filtration rate; T2D, type 2 diabetes.
Discussion
We found that plasma concentrations of circulating sTNFR1 were prognostic in identifying individuals with DKD at high risk of progressive kidney function decline who were enrolled in a clinical trial. These findings build upon similar evidence previously reported in a cohort study [4]. We analyzed data from two cohorts of individuals with T2DM and with advanced DKD; one comprised of individuals with T2DM participating in a long-term observational cohort study representing the natural history of DKD from a referral center (Joslin), and the other comprised of individuals enrolled in a 48-week trial based on representative inclusion criteria. Our analyses suggest that in independent cohorts, sTNFR1 concentrations are inversely correlated with creatinine-based estimated GFR, and higher concentrations of sTNFR1 are associated with greater risks of experiencing a discrete composite endpoint of ≥40% decline in eGFR or kidney failure. We found a high degree of concordance between the two cohorts suggesting that the prognostic performance of sTNR1 was maintained regardless of patient inclusion criteria and the distribution of the baseline sTNFR1 concentrations. The eGFR slope was attenuated by selonsertib exposure in both low- and high sTNFR1 groups, with a tendency towards greater effect in the high sTNFR1 group suggesting a potentially enhanced treatment benefit.
Even though the prognostic utility of plasma concentration of sTNFR1 in DKD has been demonstrated, the biological processes leading to increased concentration of sTNFR1 during the onset and progression of DKD, as well as response to selonsertib or other therapies, is largely unknown. ASK1 has been shown to be a mediator of TNF-α–induced apoptosis of kidney cells [9]. ASK1 inhibitors are efficacious in animal models of CKD where TNF-α is upregulated [6,10], and post-hoc analyses of this phase 2 trial in DKD patients indicated that 18-mg selonsertib may reduce the rate of decline in eGFR. Preclinical analyses demonstrate downregulation of sTNFR1 following selonsertib exposure and support ASK1 inhibition as a therapeutic strategy in progressive kidney diseases, and further studies are underway to better understand this interaction [6,11]. A prospective analysis in further trials of selonsertib in DKD is required to formally test whether any sTNFR1 plasma concentration cut point identifies a group of patients who respond better to selonsertib. Our findings confirm the prognostic utility of plasma sTNFR1 concentration in patients with DKD and the potential for enriching clinical trials with participants who are more likely to experience clinical kidney-related events.
The sTNFR1 has shown prognostic utility in observational studies in patients with DKD, but the prognostic performance of sTNFR1 plasma concentrations in DKD clinical trials has not been tested. We applied a predefined sTNFR1 cutpoint to risk-stratify patients in a phase 2 clinical trial of selonsertib and compared it with an observational cohort used to derive the cutpoint. We observed a higher probability of experiencing a clinical event and elevated hazard ratios in individuals with sTNFR1 plasma concentrations above the established cutpoint supporting its potential prognostic utility in DKD clinical trials.
Notes
Conflicts of interest
Vladimir Petrovic, Vladislav A. Malkov, and Andrew N. Billin are employees and shareholders of Gilead Sciences Inc. All authors have no other conflicts of interest to declare.
Funding
All funding sources for this study were provided by Gilead Sciences Inc., Foster City, CA, USA.
Acknowledgments
We thank Lene Vestergaard, Jacqueline M. Tarrant, Emon Elboudwarej, Yuan Tian, John T. Liles, Shawn S. Badal, and Scott D. Patterson for reviewing the manuscript. No AI software has been used in preparation of this manuscript.
Data sharing statement
Anonymized individual patient data will be shared upon request for research purposes dependent upon the nature of the request, the merit of the proposed research, the availability of the data, and its intended use. The full data sharing policy for Gilead Sciences, Inc. can be found at https://www.gilead.com/about/ethics-and-code-of-conduct/policies.
Authors’ contributions
Conceptualization: VP, VAM, ANB, GMC
Funding acquisition, Methodology: VP
Writing–original draft: VP, VAM, ANB, GMC
Writing–review & editing: All authors
All authors read and approved the final manuscript.
